Fit ABC posteriors for multiple subjects or donors — mbmm_abc_bank • mbmm

Applies mbmm_abc_fit to each subject in a named observation list and stacks the accepted particles.

Usage

mbmm_abc_bank(
  obs_list,
  simulate_fn,
  prior_sample_fn,
  n_draws = 10000,
  n_keep = NULL,
  accept_frac = 0.025,
  distance_fn = NULL,
  seed = 1,
  failure = c("discard", "error"),
  verbose = TRUE
)

Arguments

obs_list: Named list of subject observation data.frames.
simulate_fn: See mbmm_abc_fit.
prior_sample_fn: See mbmm_abc_fit.
n_draws: See mbmm_abc_fit.
n_keep: See mbmm_abc_fit.
accept_frac: See mbmm_abc_fit.
distance_fn: See mbmm_abc_fit.
seed: Base random seed. Subject i uses seed + i.
failure: See mbmm_abc_fit.
verbose: Print progress.

Value

A stacked particle data.frame with donor IDs. Subject-level ABC diagnostics are stored in the "abc_diagnostics" attribute.