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<b>Mass action rate law for irreversible reactions</b>
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Reaction scheme where the products are created from the reactants and the change of a product quantity is proportional to the product of reactant activities. The reaction scheme does not include any reverse process that creates the reactants from the products. The change of a product quantity is proportional to the quantity of one reactant.
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      The paper describes a model of immune-cancer interaction. One time unit=24 days.
Created by COPASI 4.25 (Build 207) 

This model is described in the article: 
Mathematical analysis of a tumour-immune interaction model: A moving boundary problem
Joseph Malinzi and Innocenter Amima
Mathematical Biosciences 308 (2019) 8–19
 
Abstract: 
IA spatio-temporal mathematical model, in the form of a moving boundary problem, to explain cancer dormancy is developed. Analysis of the model is carried out for both temporal and spatio-temporal cases. Stability analysis and numerical simulations of the temporal model replicate experimental observations of immune-induced tu- mour dormancy. Travelling wave solutions of the spatio-temporal model are determined using the hyperbolic tangent method and minimum wave speeds of invasion are calculated. Travelling wave analysis depicts that cell invasion dynamics are mainly driven by their motion and growth rates. A stability analysis of the spatio-tem- poral model shows a possibility of dynamical stabilization of the tumour-free steady state. Simulation results reveal that the tumour swells to a dormant level.

To cite BioModels Database, please use: BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models . 
To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. 
Please refer to CC0 Public Domain Dedication for more information.
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        <Comment>
          michaelis menten constant
        </Comment>
        <Unit>
          1
        </Unit>
      </ModelValue>
    </ListOfModelValues>
    <ListOfReactions>
      <Reaction key="Reaction_0" name="immune growth" reversible="false" fast="false" addNoise="false">
        <MiriamAnnotation>
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      <rdf:Description>
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      </rdf:Description>
    </dcterms:created>
  </rdf:Description>
</rdf:RDF>
        </MiriamAnnotation>
        <ListOfProducts>
          <Product metabolite="Metabolite_0" stoichiometry="1"/>
        </ListOfProducts>
        <ListOfConstants>
          <Constant key="Parameter_5478" name="r" value="1.3398"/>
          <Constant key="Parameter_5477" name="k" value="0.25"/>
        </ListOfConstants>
        <KineticLaw function="Function_40" unitType="Default" scalingCompartment="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Compartments[tumor microenvironment]">
          <ListOfCallParameters>
            <CallParameter functionParameter="FunctionParameter_264">
              <SourceParameter reference="ModelValue_0"/>
            </CallParameter>
            <CallParameter functionParameter="FunctionParameter_263">
              <SourceParameter reference="Metabolite_0"/>
            </CallParameter>
            <CallParameter functionParameter="FunctionParameter_262">
              <SourceParameter reference="ModelValue_1"/>
            </CallParameter>
          </ListOfCallParameters>
        </KineticLaw>
      </Reaction>
      <Reaction key="Reaction_1" name="immune stimulation" reversible="false" fast="false" addNoise="false">
        <MiriamAnnotation>
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  <rdf:Description rdf:about="#Reaction_1">
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      </rdf:Description>
    </dcterms:created>
  </rdf:Description>
</rdf:RDF>
        </MiriamAnnotation>
        <ListOfProducts>
          <Product metabolite="Metabolite_0" stoichiometry="1"/>
        </ListOfProducts>
        <ListOfModifiers>
          <Modifier metabolite="Metabolite_1" stoichiometry="1"/>
        </ListOfModifiers>
        <ListOfConstants>
          <Constant key="Parameter_5476" name="y" value="202"/>
          <Constant key="Parameter_5475" name="d" value="3.0218"/>
        </ListOfConstants>
        <KineticLaw function="Function_41" unitType="Default" scalingCompartment="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Compartments[tumor microenvironment]">
          <ListOfCallParameters>
            <CallParameter functionParameter="FunctionParameter_265">
              <SourceParameter reference="ModelValue_2"/>
            </CallParameter>
            <CallParameter functionParameter="FunctionParameter_250">
              <SourceParameter reference="Metabolite_0"/>
            </CallParameter>
            <CallParameter functionParameter="FunctionParameter_261">
              <SourceParameter reference="Metabolite_1"/>
            </CallParameter>
            <CallParameter functionParameter="FunctionParameter_266">
              <SourceParameter reference="ModelValue_11"/>
            </CallParameter>
          </ListOfCallParameters>
        </KineticLaw>
      </Reaction>
      <Reaction key="Reaction_2" name="immune death" reversible="false" fast="false" addNoise="false">
        <MiriamAnnotation>
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   xmlns:dcterms="http://purl.org/dc/terms/"
   xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
  <rdf:Description rdf:about="#Reaction_2">
    <dcterms:created>
      <rdf:Description>
        <dcterms:W3CDTF>2019-07-26T13:25:29Z</dcterms:W3CDTF>
      </rdf:Description>
    </dcterms:created>
  </rdf:Description>
</rdf:RDF>

        </MiriamAnnotation>
        <ListOfSubstrates>
          <Substrate metabolite="Metabolite_0" stoichiometry="1"/>
        </ListOfSubstrates>
        <ListOfModifiers>
          <Modifier metabolite="Metabolite_1" stoichiometry="1"/>
        </ListOfModifiers>
        <ListOfConstants>
          <Constant key="Parameter_5474" name="v" value="0.00218"/>
        </ListOfConstants>
        <KineticLaw function="Function_42" unitType="Default" scalingCompartment="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Compartments[tumor microenvironment]">
          <ListOfCallParameters>
            <CallParameter functionParameter="FunctionParameter_270">
              <SourceParameter reference="ModelValue_3"/>
            </CallParameter>
            <CallParameter functionParameter="FunctionParameter_269">
              <SourceParameter reference="Metabolite_0"/>
            </CallParameter>
            <CallParameter functionParameter="FunctionParameter_268">
              <SourceParameter reference="Metabolite_1"/>
            </CallParameter>
          </ListOfCallParameters>
        </KineticLaw>
      </Reaction>
      <Reaction key="Reaction_3" name="tumor growth" reversible="false" fast="false" addNoise="false">
        <MiriamAnnotation>
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   xmlns:dcterms="http://purl.org/dc/terms/"
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  <rdf:Description rdf:about="#Reaction_3">
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      </rdf:Description>
    </dcterms:created>
  </rdf:Description>
</rdf:RDF>

        </MiriamAnnotation>
        <ListOfProducts>
          <Product metabolite="Metabolite_1" stoichiometry="1"/>
        </ListOfProducts>
        <ListOfConstants>
          <Constant key="Parameter_5473" name="r" value="3.8835"/>
          <Constant key="Parameter_5472" name="k" value="0.5"/>
        </ListOfConstants>
        <KineticLaw function="Function_40" unitType="Default" scalingCompartment="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Compartments[tumor microenvironment]">
          <ListOfCallParameters>
            <CallParameter functionParameter="FunctionParameter_264">
              <SourceParameter reference="ModelValue_4"/>
            </CallParameter>
            <CallParameter functionParameter="FunctionParameter_263">
              <SourceParameter reference="Metabolite_1"/>
            </CallParameter>
            <CallParameter functionParameter="FunctionParameter_262">
              <SourceParameter reference="ModelValue_5"/>
            </CallParameter>
          </ListOfCallParameters>
        </KineticLaw>
      </Reaction>
      <Reaction key="Reaction_4" name="tumor killing" reversible="false" fast="false" addNoise="false">
        <MiriamAnnotation>
<rdf:RDF
   xmlns:dcterms="http://purl.org/dc/terms/"
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  <rdf:Description rdf:about="#Reaction_4">
    <dcterms:created>
      <rdf:Description>
        <dcterms:W3CDTF>2019-07-26T13:25:36Z</dcterms:W3CDTF>
      </rdf:Description>
    </dcterms:created>
  </rdf:Description>
</rdf:RDF>

        </MiriamAnnotation>
        <ListOfSubstrates>
          <Substrate metabolite="Metabolite_1" stoichiometry="1"/>
        </ListOfSubstrates>
        <ListOfModifiers>
          <Modifier metabolite="Metabolite_0" stoichiometry="1"/>
        </ListOfModifiers>
        <ListOfConstants>
          <Constant key="Parameter_5471" name="v" value="0.7279"/>
        </ListOfConstants>
        <KineticLaw function="Function_42" unitType="Default" scalingCompartment="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Compartments[tumor microenvironment]">
          <ListOfCallParameters>
            <CallParameter functionParameter="FunctionParameter_270">
              <SourceParameter reference="ModelValue_6"/>
            </CallParameter>
            <CallParameter functionParameter="FunctionParameter_269">
              <SourceParameter reference="Metabolite_1"/>
            </CallParameter>
            <CallParameter functionParameter="FunctionParameter_268">
              <SourceParameter reference="Metabolite_0"/>
            </CallParameter>
          </ListOfCallParameters>
        </KineticLaw>
      </Reaction>
      <Reaction key="Reaction_5" name="cytokine production" reversible="false" fast="false" addNoise="false">
        <MiriamAnnotation>
<rdf:RDF
   xmlns:dcterms="http://purl.org/dc/terms/"
   xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
  <rdf:Description rdf:about="#Reaction_5">
    <dcterms:created>
      <rdf:Description>
        <dcterms:W3CDTF>2019-07-26T13:25:51Z</dcterms:W3CDTF>
      </rdf:Description>
    </dcterms:created>
  </rdf:Description>
</rdf:RDF>

        </MiriamAnnotation>
        <ListOfProducts>
          <Product metabolite="Metabolite_3" stoichiometry="1"/>
        </ListOfProducts>
        <ListOfModifiers>
          <Modifier metabolite="Metabolite_1" stoichiometry="1"/>
          <Modifier metabolite="Metabolite_0" stoichiometry="1"/>
        </ListOfModifiers>
        <ListOfConstants>
          <Constant key="Parameter_5470" name="v" value="300"/>
        </ListOfConstants>
        <KineticLaw function="Function_43" unitType="Default" scalingCompartment="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Compartments[tumor microenvironment]">
          <ListOfCallParameters>
            <CallParameter functionParameter="FunctionParameter_272">
              <SourceParameter reference="Metabolite_1"/>
            </CallParameter>
            <CallParameter functionParameter="FunctionParameter_271">
              <SourceParameter reference="Metabolite_0"/>
            </CallParameter>
            <CallParameter functionParameter="FunctionParameter_267">
              <SourceParameter reference="ModelValue_7"/>
            </CallParameter>
          </ListOfCallParameters>
        </KineticLaw>
      </Reaction>
      <Reaction key="Reaction_6" name="cytokine decay" reversible="false" fast="false" addNoise="false">
        <MiriamAnnotation>
<rdf:RDF
   xmlns:dcterms="http://purl.org/dc/terms/"
   xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
  <rdf:Description rdf:about="#Reaction_6">
    <dcterms:created>
      <rdf:Description>
        <dcterms:W3CDTF>2019-07-26T13:25:55Z</dcterms:W3CDTF>
      </rdf:Description>
    </dcterms:created>
  </rdf:Description>
</rdf:RDF>

        </MiriamAnnotation>
        <ListOfSubstrates>
          <Substrate metabolite="Metabolite_3" stoichiometry="1"/>
        </ListOfSubstrates>
        <ListOfConstants>
          <Constant key="Parameter_5469" name="k1" value="1"/>
        </ListOfConstants>
        <KineticLaw function="Function_13" unitType="Default" scalingCompartment="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Compartments[tumor microenvironment]">
          <ListOfCallParameters>
            <CallParameter functionParameter="FunctionParameter_80">
              <SourceParameter reference="ModelValue_8"/>
            </CallParameter>
            <CallParameter functionParameter="FunctionParameter_81">
              <SourceParameter reference="Metabolite_3"/>
            </CallParameter>
          </ListOfCallParameters>
        </KineticLaw>
      </Reaction>
      <Reaction key="Reaction_7" name="dead tumor increase" reversible="false" fast="false" addNoise="false">
        <MiriamAnnotation>
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
  <rdf:Description rdf:about="#Reaction_7">
    <dcterms:created>
      <rdf:Description>
        <dcterms:W3CDTF>2019-07-26T13:26:04Z</dcterms:W3CDTF>
      </rdf:Description>
    </dcterms:created>
  </rdf:Description>
</rdf:RDF>
        </MiriamAnnotation>
        <ListOfProducts>
          <Product metabolite="Metabolite_2" stoichiometry="1"/>
        </ListOfProducts>
        <ListOfModifiers>
          <Modifier metabolite="Metabolite_1" stoichiometry="1"/>
          <Modifier metabolite="Metabolite_0" stoichiometry="1"/>
        </ListOfModifiers>
        <ListOfConstants>
          <Constant key="Parameter_5468" name="v" value="0.1"/>
        </ListOfConstants>
        <KineticLaw function="Function_43" unitType="Default" scalingCompartment="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Compartments[tumor microenvironment]">
          <ListOfCallParameters>
            <CallParameter functionParameter="FunctionParameter_272">
              <SourceParameter reference="Metabolite_1"/>
            </CallParameter>
            <CallParameter functionParameter="FunctionParameter_271">
              <SourceParameter reference="Metabolite_0"/>
            </CallParameter>
            <CallParameter functionParameter="FunctionParameter_267">
              <SourceParameter reference="ModelValue_9"/>
            </CallParameter>
          </ListOfCallParameters>
        </KineticLaw>
      </Reaction>
      <Reaction key="Reaction_8" name="dead tumor decrease" reversible="false" fast="false" addNoise="false">
        <MiriamAnnotation>
<rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
  <rdf:Description rdf:about="#Reaction_8">
    <dcterms:created>
      <rdf:Description>
        <dcterms:W3CDTF>2019-07-26T13:26:08Z</dcterms:W3CDTF>
      </rdf:Description>
    </dcterms:created>
  </rdf:Description>
</rdf:RDF>
        </MiriamAnnotation>
        <ListOfSubstrates>
          <Substrate metabolite="Metabolite_2" stoichiometry="1"/>
        </ListOfSubstrates>
        <ListOfConstants>
          <Constant key="Parameter_5467" name="k1" value="0.24"/>
        </ListOfConstants>
        <KineticLaw function="Function_13" unitType="Default" scalingCompartment="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Compartments[tumor microenvironment]">
          <ListOfCallParameters>
            <CallParameter functionParameter="FunctionParameter_80">
              <SourceParameter reference="ModelValue_10"/>
            </CallParameter>
            <CallParameter functionParameter="FunctionParameter_81">
              <SourceParameter reference="Metabolite_2"/>
            </CallParameter>
          </ListOfCallParameters>
        </KineticLaw>
      </Reaction>
      <Reaction key="Reaction_9" name="radius +" reversible="false" fast="false" addNoise="false">
        <MiriamAnnotation>
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   xmlns:dcterms="http://purl.org/dc/terms/"
   xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
  <rdf:Description rdf:about="#Reaction_9">
    <dcterms:created>
      <rdf:Description>
        <dcterms:W3CDTF>2019-07-26T13:26:14Z</dcterms:W3CDTF>
      </rdf:Description>
    </dcterms:created>
  </rdf:Description>
</rdf:RDF>

        </MiriamAnnotation>
        <ListOfProducts>
          <Product metabolite="Metabolite_4" stoichiometry="1"/>
        </ListOfProducts>
        <ListOfModifiers>
          <Modifier metabolite="Metabolite_1" stoichiometry="1"/>
          <Modifier metabolite="Metabolite_2" stoichiometry="1"/>
        </ListOfModifiers>
        <ListOfConstants>
          <Constant key="Parameter_5466" name="s1" value="3.8835"/>
          <Constant key="Parameter_5465" name="s2" value="0.5"/>
        </ListOfConstants>
        <KineticLaw function="Function_44" unitType="Default" scalingCompartment="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Compartments[tumor microenvironment]">
          <ListOfCallParameters>
            <CallParameter functionParameter="FunctionParameter_275">
              <SourceParameter reference="Metabolite_4"/>
            </CallParameter>
            <CallParameter functionParameter="FunctionParameter_274">
              <SourceParameter reference="ModelValue_4"/>
            </CallParameter>
            <CallParameter functionParameter="FunctionParameter_273">
              <SourceParameter reference="Metabolite_1"/>
            </CallParameter>
            <CallParameter functionParameter="FunctionParameter_276">
              <SourceParameter reference="ModelValue_5"/>
            </CallParameter>
            <CallParameter functionParameter="FunctionParameter_277">
              <SourceParameter reference="Metabolite_2"/>
            </CallParameter>
          </ListOfCallParameters>
        </KineticLaw>
      </Reaction>
      <Reaction key="Reaction_10" name="radius -" reversible="false" fast="false" addNoise="false">
        <MiriamAnnotation>
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   xmlns:dcterms="http://purl.org/dc/terms/"
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  <rdf:Description rdf:about="#Reaction_10">
    <dcterms:created>
      <rdf:Description>
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</rdf:RDF>

        </MiriamAnnotation>
        <ListOfSubstrates>
          <Substrate metabolite="Metabolite_4" stoichiometry="1"/>
        </ListOfSubstrates>
        <ListOfModifiers>
          <Modifier metabolite="Metabolite_2" stoichiometry="1"/>
          <Modifier metabolite="Metabolite_1" stoichiometry="1"/>
        </ListOfModifiers>
        <ListOfConstants>
          <Constant key="Parameter_5464" name="u2" value="0.24"/>
        </ListOfConstants>
        <KineticLaw function="Function_45" unitType="Default" scalingCompartment="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Compartments[tumor microenvironment]">
          <ListOfCallParameters>
            <CallParameter functionParameter="FunctionParameter_282">
              <SourceParameter reference="Metabolite_4"/>
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            <CallParameter functionParameter="FunctionParameter_281">
              <SourceParameter reference="ModelValue_10"/>
            </CallParameter>
            <CallParameter functionParameter="FunctionParameter_280">
              <SourceParameter reference="Metabolite_2"/>
            </CallParameter>
            <CallParameter functionParameter="FunctionParameter_279">
              <SourceParameter reference="Metabolite_1"/>
            </CallParameter>
          </ListOfCallParameters>
        </KineticLaw>
      </Reaction>
    </ListOfReactions>
    <ListOfModelParameterSets activeSet="ModelParameterSet_1">
      <ModelParameterSet key="ModelParameterSet_1" name="Initial State">
        <MiriamAnnotation>
<rdf:RDF
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<dcterms:W3CDTF>2019-07-26T14:09:57Z</dcterms:W3CDTF>
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        <ModelParameterGroup cn="String=Initial Time" type="Group">
          <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction" value="0" type="Model" simulationType="time"/>
        </ModelParameterGroup>
        <ModelParameterGroup cn="String=Initial Compartment Sizes" type="Group">
          <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Compartments[tumor microenvironment]" value="1" type="Compartment" simulationType="fixed"/>
        </ModelParameterGroup>
        <ModelParameterGroup cn="String=Initial Species Values" type="Group">
          <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Compartments[tumor microenvironment],Vector=Metabolites[I]" value="0.29999999999999999" type="Species" simulationType="reactions"/>
          <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Compartments[tumor microenvironment],Vector=Metabolites[T]" value="0.80000000000000004" type="Species" simulationType="reactions"/>
          <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Compartments[tumor microenvironment],Vector=Metabolites[Td]" value="0.10000000000000001" type="Species" simulationType="reactions"/>
          <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Compartments[tumor microenvironment],Vector=Metabolites[C]" value="9.9999999999999995e-07" type="Species" simulationType="reactions"/>
          <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Compartments[tumor microenvironment],Vector=Metabolites[R]" value="0.80000000000000004" type="Species" simulationType="reactions"/>
        </ModelParameterGroup>
        <ModelParameterGroup cn="String=Initial Global Quantities" type="Group">
          <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Values[f1]" value="1.3398000000000001" type="ModelValue" simulationType="fixed"/>
          <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Values[f2]" value="0.25" type="ModelValue" simulationType="fixed"/>
          <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Values[d]" value="3.0217999999999998" type="ModelValue" simulationType="fixed"/>
          <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Values[v1]" value="0.0021800000000000001" type="ModelValue" simulationType="fixed"/>
          <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Values[s1]" value="3.8835000000000002" type="ModelValue" simulationType="fixed"/>
          <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Values[s2]" value="0.5" type="ModelValue" simulationType="fixed"/>
          <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Values[v2]" value="0.72789999999999999" type="ModelValue" simulationType="fixed"/>
          <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Values[v3]" value="300" type="ModelValue" simulationType="fixed"/>
          <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Values[u1]" value="1" type="ModelValue" simulationType="fixed"/>
          <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Values[r]" value="0.10000000000000001" type="ModelValue" simulationType="fixed"/>
          <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Values[u2]" value="0.23999999999999999" type="ModelValue" simulationType="fixed"/>
          <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Values[y]" value="202" type="ModelValue" simulationType="fixed"/>
        </ModelParameterGroup>
        <ModelParameterGroup cn="String=Kinetic Parameters" type="Group">
          <ModelParameterGroup cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Reactions[immune growth]" type="Reaction">
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              <InitialExpression>
                &lt;CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Values[f1],Reference=InitialValue>
              </InitialExpression>
            </ModelParameter>
            <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Reactions[immune growth],ParameterGroup=Parameters,Parameter=k" value="0.25" type="ReactionParameter" simulationType="assignment">
              <InitialExpression>
                &lt;CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Values[f2],Reference=InitialValue>
              </InitialExpression>
            </ModelParameter>
          </ModelParameterGroup>
          <ModelParameterGroup cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Reactions[immune stimulation]" type="Reaction">
            <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Reactions[immune stimulation],ParameterGroup=Parameters,Parameter=y" value="202" type="ReactionParameter" simulationType="assignment">
              <InitialExpression>
                &lt;CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Values[y],Reference=InitialValue>
              </InitialExpression>
            </ModelParameter>
            <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Reactions[immune stimulation],ParameterGroup=Parameters,Parameter=d" value="3.0217999999999998" type="ReactionParameter" simulationType="assignment">
              <InitialExpression>
                &lt;CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Values[d],Reference=InitialValue>
              </InitialExpression>
            </ModelParameter>
          </ModelParameterGroup>
          <ModelParameterGroup cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Reactions[immune death]" type="Reaction">
            <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Reactions[immune death],ParameterGroup=Parameters,Parameter=v" value="0.0021800000000000001" type="ReactionParameter" simulationType="assignment">
              <InitialExpression>
                &lt;CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Values[v1],Reference=InitialValue>
              </InitialExpression>
            </ModelParameter>
          </ModelParameterGroup>
          <ModelParameterGroup cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Reactions[tumor growth]" type="Reaction">
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              <InitialExpression>
                &lt;CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Values[s1],Reference=InitialValue>
              </InitialExpression>
            </ModelParameter>
            <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Reactions[tumor growth],ParameterGroup=Parameters,Parameter=k" value="0.5" type="ReactionParameter" simulationType="assignment">
              <InitialExpression>
                &lt;CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Values[s2],Reference=InitialValue>
              </InitialExpression>
            </ModelParameter>
          </ModelParameterGroup>
          <ModelParameterGroup cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Reactions[tumor killing]" type="Reaction">
            <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Reactions[tumor killing],ParameterGroup=Parameters,Parameter=v" value="0.72789999999999999" type="ReactionParameter" simulationType="assignment">
              <InitialExpression>
                &lt;CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Values[v2],Reference=InitialValue>
              </InitialExpression>
            </ModelParameter>
          </ModelParameterGroup>
          <ModelParameterGroup cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Reactions[cytokine production]" type="Reaction">
            <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Reactions[cytokine production],ParameterGroup=Parameters,Parameter=v" value="300" type="ReactionParameter" simulationType="assignment">
              <InitialExpression>
                &lt;CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Values[v3],Reference=InitialValue>
              </InitialExpression>
            </ModelParameter>
          </ModelParameterGroup>
          <ModelParameterGroup cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Reactions[cytokine decay]" type="Reaction">
            <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Reactions[cytokine decay],ParameterGroup=Parameters,Parameter=k1" value="1" type="ReactionParameter" simulationType="assignment">
              <InitialExpression>
                &lt;CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Values[u1],Reference=InitialValue>
              </InitialExpression>
            </ModelParameter>
          </ModelParameterGroup>
          <ModelParameterGroup cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Reactions[dead tumor increase]" type="Reaction">
            <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Reactions[dead tumor increase],ParameterGroup=Parameters,Parameter=v" value="0.10000000000000001" type="ReactionParameter" simulationType="assignment">
              <InitialExpression>
                &lt;CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Values[r],Reference=InitialValue>
              </InitialExpression>
            </ModelParameter>
          </ModelParameterGroup>
          <ModelParameterGroup cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Reactions[dead tumor decrease]" type="Reaction">
            <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Reactions[dead tumor decrease],ParameterGroup=Parameters,Parameter=k1" value="0.23999999999999999" type="ReactionParameter" simulationType="assignment">
              <InitialExpression>
                &lt;CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Values[u2],Reference=InitialValue>
              </InitialExpression>
            </ModelParameter>
          </ModelParameterGroup>
          <ModelParameterGroup cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Reactions[radius +]" type="Reaction">
            <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Reactions[radius +],ParameterGroup=Parameters,Parameter=s1" value="3.8835000000000002" type="ReactionParameter" simulationType="assignment">
              <InitialExpression>
                &lt;CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Values[s1],Reference=InitialValue>
              </InitialExpression>
            </ModelParameter>
            <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Reactions[radius +],ParameterGroup=Parameters,Parameter=s2" value="0.5" type="ReactionParameter" simulationType="assignment">
              <InitialExpression>
                &lt;CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Values[s2],Reference=InitialValue>
              </InitialExpression>
            </ModelParameter>
          </ModelParameterGroup>
          <ModelParameterGroup cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Reactions[radius -]" type="Reaction">
            <ModelParameter cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Reactions[radius -],ParameterGroup=Parameters,Parameter=u2" value="0.23999999999999999" type="ReactionParameter" simulationType="assignment">
              <InitialExpression>
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              </InitialExpression>
            </ModelParameter>
          </ModelParameterGroup>
        </ModelParameterGroup>
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    <StateTemplate>
      <StateTemplateVariable objectReference="Model_1"/>
      <StateTemplateVariable objectReference="Metabolite_0"/>
      <StateTemplateVariable objectReference="Metabolite_1"/>
      <StateTemplateVariable objectReference="Metabolite_2"/>
      <StateTemplateVariable objectReference="Metabolite_3"/>
      <StateTemplateVariable objectReference="Metabolite_4"/>
      <StateTemplateVariable objectReference="Compartment_0"/>
      <StateTemplateVariable objectReference="ModelValue_0"/>
      <StateTemplateVariable objectReference="ModelValue_1"/>
      <StateTemplateVariable objectReference="ModelValue_2"/>
      <StateTemplateVariable objectReference="ModelValue_3"/>
      <StateTemplateVariable objectReference="ModelValue_4"/>
      <StateTemplateVariable objectReference="ModelValue_5"/>
      <StateTemplateVariable objectReference="ModelValue_6"/>
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      <StateTemplateVariable objectReference="ModelValue_8"/>
      <StateTemplateVariable objectReference="ModelValue_9"/>
      <StateTemplateVariable objectReference="ModelValue_10"/>
      <StateTemplateVariable objectReference="ModelValue_11"/>
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    <InitialState type="initialState">
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        <ParameterGroup name="ScanItems">
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        <Parameter name="Adjust initial conditions" type="bool" value="0"/>
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        <Parameter name="LimitOutTime" type="bool" value="0"/>
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        <Parameter name="LimitUntilConvergence" type="bool" value="0"/>
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      <Parameter name="log X" type="bool" value="0"/>
      <Parameter name="log Y" type="bool" value="0"/>
      <ListOfPlotItems>
        <PlotItem name="[I]|Time" type="Curve2D">
          <Parameter name="Line type" type="unsignedInteger" value="0"/>
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          <Parameter name="Symbol subtype" type="unsignedInteger" value="0"/>
          <Parameter name="Color" type="string" value="auto"/>
          <Parameter name="Recording Activity" type="string" value="during"/>
          <ListOfChannels>
            <ChannelSpec cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Reference=Time"/>
            <ChannelSpec cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Compartments[tumor microenvironment],Vector=Metabolites[I],Reference=Concentration"/>
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        <PlotItem name="[T]|Time" type="Curve2D">
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          <Parameter name="Color" type="string" value="auto"/>
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          <ListOfChannels>
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            <ChannelSpec cn="CN=Root,Model=Malinzi2018 - tumor-immune interaction,Vector=Compartments[tumor microenvironment],Vector=Metabolites[T],Reference=Concentration"/>
          </ListOfChannels>
        </PlotItem>
      </ListOfPlotItems>
    </PlotSpecification>
  </ListOfPlots>
  <GUI>
  </GUI>
  <ListOfUnitDefinitions>
    <UnitDefinition key="Unit_1" name="meter" symbol="m">
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